Index

A

add_metric() (SegSpy.core.ParticleObject method)

area_px (SegSpy.core.ParticleObject attribute)

B

backend (SegSpy.config.SegConfig attribute)

background_kernel (SegSpy.config.SegConfig attribute) bbox (SegSpy.core.ParticleObject attribute)

C

clahe_clip (SegSpy.config.SegConfig attribute) clahe_tile (SegSpy.config.SegConfig attribute)

clear() (SegSpy.backends.registry.SegmentationRegistry class method) compute_morphology (SegSpy.config.SegConfig attribute)

E

extract_objects() (SegSpy.backends.base.SegmentationBackend method)

F

filter_type (SegSpy.config.SegConfig attribute)

find_compatible() (SegSpy.backends.registry.SegmentationRegistry class method) from_signal() (SegSpy.config.SegConfig class method)

G

get() (SegSpy.backends.registry.SegmentationRegistry class method)

get_physical_scale_nm() (SegSpy.core.ParticleObject method) get_scale_nm() (in module SegSpy.io)

I

image_roi (SegSpy.core.ParticleObject attribute)

L

list_backends() (SegSpy.backends.registry.SegmentationRegistry class method)

M

mask_roi (SegSpy.core.ParticleObject attribute) measure_morphology() (in module SegSpy.morphology)

metrics (SegSpy.core.ParticleObject attribute) microscope_type (SegSpy.config.SegConfig attribute) min_area (SegSpy.config.SegConfig attribute)

O

offset (SegSpy.core.ParticleObject attribute)

output_dir (SegSpy.config.SegConfig attribute)

P

particle_id (SegSpy.core.ParticleObject attribute)

ParticleObject (class in SegSpy.core)

R

register() (SegSpy.backends.registry.SegmentationRegistry class method)

S

sam_checkpoint_path (SegSpy.config.SegConfig attribute) sam_device (SegSpy.config.SegConfig attribute) sam_edge_margin (SegSpy.config.SegConfig attribute) sam_intensity_ratio (SegSpy.config.SegConfig attribute) sam_max_area_ratio (SegSpy.config.SegConfig attribute) sam_min_area_ratio (SegSpy.config.SegConfig attribute) sam_model_type (SegSpy.config.SegConfig attribute) sam_points_per_side (SegSpy.config.SegConfig attribute) sam_pred_iou_thresh (SegSpy.config.SegConfig attribute) sam_stability_score_thresh (SegSpy.config.SegConfig attribute)

SAMSegmenter (class in SegSpy.backends.sam) SegConfig (class in SegSpy.config) segment() (SegSpy.backends.base.SegmentationBackend method) (SegSpy.backends.sam.SAMSegmenter method) (SegSpy.backends.traditional.TraditionalCVSegmenter method) SegmentationBackend (class in SegSpy.backends.base) SegmentationRegistry (class in SegSpy.backends.registry) supports() (SegSpy.backends.base.SegmentationBackend class method) (SegSpy.backends.sam.SAMSegmenter class method) (SegSpy.backends.traditional.TraditionalCVSegmenter class method)

T

threshold_method (SegSpy.config.SegConfig attribute)

to_uint8() (in module SegSpy.io) TraditionalCVSegmenter (class in SegSpy.backends.traditional)

U

use_grabcut_refinement (SegSpy.config.SegConfig attribute)